Methods

all_xrefs (Ensembl::Core::Gene)
assembled_seq_regions (Ensembl::Core::SeqRegion)
assembly_links_as_assembly (Ensembl::Core::SeqRegion)
assembly_links_as_component (Ensembl::Core::SeqRegion)
cdna2genomic (Ensembl::Core::Transcript)
cds2genomic (Ensembl::Core::Transcript)
cds_seq (Ensembl::Core::Transcript)
coding_region_cdna_end (Ensembl::Core::Transcript)
coding_region_cdna_start (Ensembl::Core::Transcript)
coding_region_genomic_end (Ensembl::Core::Transcript)
coding_region_genomic_start (Ensembl::Core::Transcript)
component_seq_regions (Ensembl::Core::SeqRegion)
connect (Ensembl::Variation::DBConnection)
connect (Ensembl::Core::DBConnection)
display_label (Ensembl::Core::Transcript)
display_label (Ensembl::Core::Translation)
display_label (Ensembl::Core::Gene)
display_name (Ensembl::Core::Gene)
display_name (Ensembl::Core::Gap)
display_name (Ensembl::Core::Translation)
display_name (Ensembl::Core::Transcript)
display_name (Ensembl::Core::Slice)
dna_align_features (Ensembl::Core::Slice)
excise (Ensembl::Core::Slice)
exon_for_cdna_position (Ensembl::Core::Transcript)
exon_for_genomic_position (Ensembl::Core::Transcript)
exons (Ensembl::Core::Transcript)
fetch_all (Ensembl::Core::Slice)
fetch_by_gene_stable_id (Ensembl::Core::Slice)
fetch_by_region (Ensembl::Core::Slice)
fetch_by_transcript_stable_id (Ensembl::Core::Slice)
find_all_by_attrib_type_value (Ensembl::Core::MiscFeature)
find_all_by_display_label (Ensembl::Core::ExternalDb)
find_all_by_name (Ensembl::Core::Marker)
find_all_by_name (Ensembl::Core::Gene)
find_all_by_stable_id (Ensembl::Core::Transcript)
find_by_attrib_type_value (Ensembl::Core::MiscFeature)
find_by_display_label (Ensembl::Core::ExternalDb)
find_by_name (Ensembl::Core::Marker)
find_by_name (Ensembl::Core::Gene)
find_by_stable_id (Ensembl::Core::Transcript)
find_by_stable_id (Ensembl::Core::Transcript)
find_by_stable_id (Ensembl::Core::Gene)
find_by_stable_id (Ensembl::Core::Translation)
find_default_by_name (Ensembl::Core::CoordSystem)
find_seqlevel (Ensembl::Core::CoordSystem)
find_toplevel (Ensembl::Core::CoordSystem)
five_prime_utr_seq (Ensembl::Core::Transcript)
genomic2cdna (Ensembl::Core::Transcript)
genomic2cds (Ensembl::Core::Transcript)
genomic2pep (Ensembl::Core::Transcript)
get_objects (Ensembl::Core::Slice)
go_terms (Ensembl::Core::Gene)
hgnc (Ensembl::Core::Gene)
inheritance_column (Ensembl::Core::ExternalDb)
inheritance_column (Ensembl::Core::Marker)
label (Ensembl::Core::Translation)
label (Ensembl::Core::Gene)
label (Ensembl::Core::Transcript)
length (Ensembl::Core::Slice)
length (Ensembl::Core::Sliceable)
method_missing (Ensembl::Core::Slice)
misc_features (Ensembl::Core::Slice)
name (Ensembl::Core::Marker)
name (Ensembl::Core::Gene)
name (Ensembl::Core::Map)
name (Ensembl::Core::Transcript)
name (Ensembl::Core::Translation)
name_with_version (Ensembl::Core::CoordSystem)
new (Ensembl::Core::Gap)
new (Ensembl::Core::Slice)
overlaps? (Ensembl::Core::Slice)
pep2genomic (Ensembl::Core::Transcript)
project (Ensembl::Core::Slice)
project (Ensembl::Core::Sliceable)
protein_align_features (Ensembl::Core::Slice)
protein_seq (Ensembl::Core::Transcript)
repeatmasked_seq (Ensembl::Core::Slice)
seq (Ensembl::Core::Exon)
seq (Ensembl::Core::SeqRegion)
seq (Ensembl::Core::Sliceable)
seq (Ensembl::Core::Transcript)
seq (Ensembl::Core::Slice)
seqlevel? (Ensembl::Core::CoordSystem)
sequence (Ensembl::Core::SeqRegion)
slice (Ensembl::Core::SeqRegion)
slice (Ensembl::Core::Sliceable)
split (Ensembl::Core::Slice)
stable_id (Ensembl::Core::Transcript)
stable_id (Ensembl::Core::Gene)
stable_id (Ensembl::Core::Exon)
stable_id (Ensembl::Core::Translation)
start (Ensembl::Core::Sliceable)
stop (Ensembl::Core::Sliceable)
strand (Ensembl::Core::Sliceable)
sub_slice (Ensembl::Core::Slice)
subseq (Ensembl::Core::SeqRegion)
subsequence (Ensembl::Core::SeqRegion)
three_prime_utr_seq (Ensembl::Core::Transcript)
to_s (Ensembl::Core::Xref)
to_s (Ensembl::Core::Slice)
to_s (Ensembl::Core::MiscAttrib)
toplevel? (Ensembl::Core::CoordSystem)
transform (Ensembl::Core::Sliceable)
within? (Ensembl::Core::Slice)